Adam Gudyś
Adam Gudyś
Hello! Sorry for the late response. We'll do our best to add this feature in the next FAMSA release. Best, Adam
Hello, Instead of using fixed-sized sketches, Kmer-db selects given fraction of k-mers as this allows more accurate distance estimation for genomes with different sizes. But if you now more or...
Hello, As for the variable CPU usage, the behaviour you observed is expected. In medoid heuristic, due to algorithmic reasons, it is not that easy to distribute the workload evenly...
Hello @uzbit! Thank you for your effort! I will take a look at your pull request ASAP. Best, Adam
@uzbit Hello! Sorry for not responding for such a long time. The latest revision of FAMSA we have been working recently includes serious refactorizations. This is why we restrained from...
Hello, Sorry for the late response. Actually, there is no additional complexity underneath when you perform a profile-profile alignment on a profile and unaligned sequence (it was designed to handle...
Hello @Thernn88 I think I get your point now. You want multiple sequences to be added to the existing alignment. This, indeed, cannot be done directly by FAMSA - repeated...