Adam Gudyś
Adam Gudyś
Dear Mikhel, We can think of adding the functionality you mentioned to kmer-db. However, the number of all possible intersections grows exponentially with a number of queries. Wouldn't it be...
@nekokoe Thanks for reporting. I'll have a look on that!
@nekokoe Sorry for the delay. As I can see, you built a single KMC database from all the genomes. This database, when given to the kmer-db, is treated as a...
Dear Carles, At the moment there is no possibility to use different seeds - we will add this feature in the next release. In the meantime, you can try generating...
Actually, there is something you could use. There is an undocumented option `-f-start` that was designed to process all kmers in portions. It represents the relative minimum threshold of the...
I've accidentally sent you a half of the comment but its been edited now :)
Exactly, you'll have overlapping k-mer spectra used in distance calculation. To have real bootstrapping, different seeds are needed. We'll work on that.
Hello! We had some ideas about, but didn't want to provide a solution without testing if it's properly random. We'll dig into that again soon and let you know. Adam
Hello @arvestad, Thank you for reporting the issue. I'll do my best to fix it soon! Regards, Adam
Hello @arvestad! The bug has hopefully been fixed in the latest commit. Please let me know if it works (you would need to build the binary from the sources, though...