Andrew G. McArthur comments

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                                            Andrew G. McArthur

Identification of 76 novel B1 metallo-β-lactamases through large-scale screening of genomic and metagenomic data

Thanks @danielhhaft, we'll keep this issue open pending your results.

BioF class B2 beta-lactamase should get a PFM allele number ?

PFM-4 as a synonym for BioF has been curated in CARD and will appear in the next release. We will defer to NCBI on whether this becomes the official name.

Official abbreviations for antibiotics/drugs

Apologies, addressing this was pandemic delayed. We have made our first baby steps towards this with CARD Short Names, see #25. These use https://journals.asm.org/journal/aac/abbreviations. We are now working towards supporting...

BioF class B2 beta-lactamase should get a PFM allele number ?

Resolved at CARD: https://card.mcmaster.ca/ontology/45492

Inconsistency in ordering of Drug Classes between genes

@DanCWB we are working on a major upgrade of the CARD website codebase, so will work on this issue once complete. But to double check, you mean the order of...

Review/Update RGI for Galaxy

We will update the Galaxy wrapper once the current major upgrade to the CARD website code base is complete.

RGI heatmap does not execute

Full documentation https://github.com/arpcard/rgi

depreciate -split_prodigal_jobs

Re-opening to assess if we should handle training better or depreciate.