Anthony Gitter

In our meeting today we created an initial list of terms. @cmilica can create a new document where we discuss and finalize that list.

Thanks for your interest @antoine4ucsd. 1. The simulations were derived from the impulse model from ImpulseDE. The [paper](https://doi.org/10.1093/bioinformatics/btw665) doesn't describe the model in detail but you can see it in...

#45 added a placeholder in the vignette for suggestions about how to select differentially expressed genes. We'll follow up with suggestions for specific packages.

@kainanli thanks for the error report. @thevaachandereng and I can work to help with this. Can you please tell us more about when you encounter this error message? Are you...

Hi @kainanli I'm closing this issue because we cannot debug the error without more information. Please reopen it if you can answer the questions above.

@likainan001 would you be able to share the data with us that causes the error? If the example script runs and your data causes an error, we may need to...

@thevaachandereng can you please see if you can reproduce this error with the dataset provided?

@likainan001 I was able to reproduce this error with your dataset but have not yet investigated the cause. I loaded the dataset, set `timepoints corr.bestlag(dataset, timepoints = timepoints, max.lag =...

I was able to narrow down the range of genes that causes this error, which should help the debugging: ``` corr.bestlag(dataset[56:59, ], timepoints=timepoints, max.lag = 1, penalty = "high", iter...

@thevaachandereng have you had a chance to try to investigate the behavior I described above? @likainan001 if you need to run LPWC before we fix this, you could try removing...