Angelica Galianese

It creates SuperAnno In-Peaks-Summary.rds, Matches-In-Peaks.rds, and Positions-In-Peaks.rds, so that step is working at least.

There doesn't seem to be an issue with the Annotations Matrix, but where can I find the code for the function .getRowSums, used here? Thanks! ``` rS

I found 2 issues. If you only supply one bed file, then you get an error about the annotations matrix. There also seems to be an incompatibility with chromVAR with...