afcmalone

Hi, I am combining 6 snap objects. I have combined the objects using common bins to create a snap object in R, x.sp I then went to step 9 in...

runHomer error

4

Hi, I am getting no results when i runHomer. I add pmat to my snapATAC file in R. the peak files (bed) added to the .snap file are in the...

Hi, When I try to apply snapATAC to my data I get errors. What I am trying to do is integrate 3 datasets (all from same 10X method – 3...

integrating with seurat object

5

Hi, I was wondering how you best integrate genotype data from souporcell into an existing seurat object so that each cell can be colored by genotype (or origin such as...

seurat v3+

1

Hi, I had another question. are you guys planning to update your code to take CITE-seq Seurat objects created with Seurat V3 or later? Thanks, Andrew