Obtaining a cell type GRNs.

[khanthanan]

Hi thank you for creating an extensive GRN inference package. I have a quick question. I'm currently working on a project where I need to infer GRNs for each cell type and compare across disease condition in terms of AUCs. However, I'm getting no entries in the DEM file. I believe this is due to higher similarity of cells across conditions within the same cell type. So snakemake crashes right after the DEM step assuming the file is empty as it was corrupted. Just wondering is there any alternative for this.

Thank you in advance, Kalpana