Issue with Cytoscape output file

[alirosen]

Hi,

I am trying to load my network (.cys) file into Cytoscape but get this error:

Don't know how to read file:/network_CD8_Tcells/cys

I used this code to convert my network to a Cytoscape file: export_to_cytoscape(G, pos, out_file = os.path.join(work_dir, 'scenicplus/network_CD8_T_cells.cys'))

Can anyone assist with this?

[redvoidling]

Same Problem here!

[alirosen]

@redvoidling if you export the node and edge tables as .csv files you can just import them directly into Cytoscape :)