pyscenic grn: error: argument expression_mtx_fname

[yulchen810]

[This has been resolved by removing quote] Hi, Thank you for your excellent work. I'm running pyscenic using docker hub. I can open the expressionMatrix in vs code, but it reports an error pyscenic.cli.pyscenic - ERROR - The expression matrix supplied does not contain any genes. Make sure the extension of the file matches the format (tab separation for TSV and comma sepatration for CSV).

Could you please have a look at this issue? Thank you very much!

[ghuls]

To me it looks like your expression matrix does not contain TABs but spaces as separators.

awk -v OFS='\t' '$1 = $1' /d/pyscenic/data/FB6_countsMatrix.tsv > /d/pyscenic/data/FB6_countsMatrix.with_tabs.tsv