pySCENIC
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Expression matrix should be provided in the loom file format.[BUG]
hello,
Describe the bug My shell:
pyscenic aucell \
scenic.loom \
reg.csv \
--output pyscenic_output.loom \
--num_workers 5
My log
2024-06-13 13:14:58,995 - pyscenic.cli.pyscenic - INFO - Loading expression matrix.
2024-06-13 13:15:01,551 - pyscenic.cli.pyscenic - INFO - Loading gene signatures.
Create regulons from a dataframe of enriched features.
Additional columns saved: []
2024-06-13 13:15:04,886 - pyscenic.cli.pyscenic - INFO - Calculating cellular enrichment.
2024-06-13 13:15:44,567 - pyscenic.cli.pyscenic - INFO - Writing results to file.
2024-06-13 13:18:18,668 - pyscenic.cli.pyscenic - ERROR - Expression matrix should be provided in the loom file format.
Based on the log of my execution results, it appears that I have run successfully. Why am I still getting error messages :
ERROR - Expression matrix should be provided in the loom file format.
Could you please help with this? Thanks !!!