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[BUG] Encoding Argument While Loading Pickle File Produces Error in pyscenic aucell

Open ggruenhagen3 opened this issue 8 months ago • 0 comments

When trying to input a pickle (dat) file of regulons for pyscenic aucell, I got the following error: pyscenic.cli.pyscenic - ERROR - binary mode doesn't take an encoding argument. This is due to line 33 of ctxcore/genesig.py, which should be changed so that an encoding argument isn't used like so return open(filename, mode).

Version information: pyscenic 0.12.1, python 3.9.18, pickle 4.0. Executed on a HPC running CentOS Linux 7.

ggruenhagen3 avatar Jun 11 '24 15:06 ggruenhagen3