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Published 20 hours ago • verified publisher icon aertslab

convert SCENIC+ public motif collection to HOMER format

Open pchiang5 opened this issue 2 years ago • 1 comments

Hello,

Can the database be converted to HOMER format with Log odds detection threshold? Thank you.

pchiang5 avatar Aug 14 '23 04:08 pchiang5

Conversion to HOMER format with Log odds detection threshold is difficult. As far as I know, it would only be possible if you have access to the original sequences (positive and negative) used to make the original PWMs.

ghuls avatar Aug 16 '23 10:08 ghuls