aeisenbarth
aeisenbarth
See https://github.com/scverse/napari-spatialdata/issues/150 To give users more control over whether a 3/4-channel image is interpreted and visualized as RGB, channel names now need to be explicitly set to ["r", "g", "b"]....
~When the table misses some instances or contains NaN values, colors are not mapped. Specifically if:~ - ~The table contains less `instances` than the segmentation image in `labels`~ - ~Or...
## Use case - As a plugin developer, I want to programmatically display a single SpatialData image so that my plugin can support SpatialData as storage format and provide interaction...
In pull request #115 for issue #66, a logic was implemented that converts multichannels to RGB if they are three. In our use case, we have non-RGB channels, that can...
As a user, I (may) want to render just the data, without title/legend/axes. This is related to https://github.com/scverse/spatialdata-plot/issues/189. The spatialdata-plot defaults produce a classic matplotlib plot with title, labelled axes...
Rendering commands that take channels fail when you pass channel names instead of indices. ## Example ```python from spatialdata import SpatialData from spatialdata.models import Image2DModel import numpy as np import...
When SpatialData has no elements and I select no elements from it, I expected it to be a valid operation. However, an error is raised: ```python from spatialdata import SpatialData...
In this pull request, I added systematic test cases for most options of `render_labels`. ## Test matrix I ran into a couple of issues with options for which I could...
Given a SpatialData with multiple labels, when rendering a single labels image with a palette matching table values assigned to it, a key error is raised. ## Example ```python import...
I would like to generate static images files from NGFF/SpatialData datasets and presets stored in their NGFF Omero metadata, so that one can preview datasets without opening them interactively in...