aeisenbarth

[BUG] Spatial coordinates not detected as layout/embedding for AnnData

3

**Describe the bug** When loading a spatial AnnData file, only embeddings like "pca", "umap" are offered but not "spatial". According to the [documentation](https://github.com/chanzuckerberg/cellxgene-documentation/blob/03fff9c989e94755e1a7f9709b1f821af7828633/explore-data/explorer-tutorials.md#cellxgene-explorer-interface), it should be possible to display spatial...

Asynchronous choices callable in CategoricalWidget

1

When you want to create a categorical widget with choices that are produced by a long-running function (e.g. network request), the process freezes the user interface. Usually one would run...

Improve nesting of containers with labels (group box)

2

Sometimes you want to structure user interfaces by grouping widgets. Currently when adding two containers A and B to a Napari dock (a parent container), the widgets in the nested...

Provide AnnData viewer as Napari plugin

1

## Feature The `Interactive` viewer is currently implemented as an **application** (wrapping and using Napari as a view component), which can, as far as I could see, only be launched...

Help not shown if semantic-release not configured

1

## The problem Apparently after upgrading from 7.x, the configuration needs changes which I am trying to try out and debug. For this, I want to see the available CLI...

Fix `join_segmentations` dtype error for np.uint

3

## Description When the input arrays are of type `uint64`, adding a builtin type like `1` produces a `float64`. This change casts the result back to the input dtype. Fixes...

`join_segmentations` dtype error for `np.uint`

1

### Description: When input arrays are created with `np.uint`, operations between different integer dtypes change behavior and produce a float, causing an error. This is because `factor = s2.max() +...

Make default for percent_top more permissive

1

When running QC on a single-cell dataset with less than 500 features and leaving argument defaults, an index error is raised. This is because the default for `percent_top` assumes genomics...

Imported string constant has wrong docstring of `str`

4

### Describe the bug When a string constant is imported, sphinx cannot find the docstring of the original definition (in the module form where it was imported). Instead, it gives...

In autosummary, expose complete objtype information to templates

3

**Is your feature request related to a problem? Please describe.** When using autodoc\_pydantic with recursive autosummary, I must edit the template so that it documents items with objtype `pydantic_model`. The...