DivNet

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DivNet on Transcripts per Million (TPM) values derived from metagenomic data

4

Hi! Thanks for developing the tool and the RUST extension. I have a viral metagenomic dataset with 100 samples. I assembled viral contigs from each sample, and clustered the contigs...

lingyi-owl

Hi, I appreciate your help. I ran testBetaDiversity in a subset of samples of a phyloseq object successfully (75 samples), then I try to do the same in a smaller...

emi-panzetta

DivNet on rRNA gene counts derived from metagenomes?

7

Hi, First of all, thanks for developing this tool! I have a few metagenomic samples from which I've estimated the number of couple of reads mapping in proper pair to...

mgabriell1

Diversity estimates not plausible

16

Hi, I already posted this in the divnet-rs page as I computed my diversity estimates with divnet-rs (5 replicates). When computing Shannon and Inverse Simpson diversities for my samples from...

ARetter90

R "killed" or cores not returning data

4

I am attempting to use DivNet and can't get divnet() to work when my tables are clustered to a higher percentage similarity. I have attempted clustering to various percentage similarities;...

AlexaBennett

Estimating Shannon Evenness with uncertainty and other parameters associated with diversity values

1

Hey Willis Lab. I have less of an issue and more of a question. I'm happy to ask via some other forum if this isn't the place. I notice that...

cramjaco

_This is more of a feature request than an issue._ What is the correct method, statistically speaking, for testing for correlations between estimates in bipartite datasets? What if the data...

AlexaBennett