adrabent

Results 8 comments of adrabent

cwltool: Input of type Directory[] stays readonly if using writable: true in InitialWorkDirRequirement

Thanks for finding the issue. I have used `pip` to install `cwltool`. Is there a "pippy" way to test your branch/commit? Alex

cwltool: Input of type Directory[] stays readonly if using writable: true in InitialWorkDirRequirement

I just manually corrected the typo. Issue looks fixed to me :)

oidc-agent fails with "Could not find a public client for this issuer." when adding multiple shortname for a single issuer

I can confirm this issue. It still persists in version 5.2.3 in an already existing installation (upgrading from an older one). I had to remove the config folder and re-install...

cwltool: Step using InplaceUpdate conflicts with still active readers from an already finished job

Issue still persists. Is there any update on that issue? Cheers, Alex

cwltool: Step using InplaceUpdate conflicts with still active readers from an already finished job

Dear @mr-c, yes I call the workflow like this: `cwltool --parallel --outdir $PWD/results/ --tmpdir-prefix $PWD/tmp/ ` By workflow definition the step that complains can only run IF the step where...

cwltool: Step using InplaceUpdate conflicts with still active readers from an already finished job

Are there any updates on that issue?

toil ignores LoadListingRequirement

Dear @stxue1 and @mr-c, I tried to reproduce the listing behaviour with a minimal example workflow as well. But interestingly I need to call the step two times to make...

toil ignores LoadListingRequirement

Any updates on that issue? We are still not able to run a significant fraction of workflows if using `toil`. (they all work with `cwltool`). But in certain environments `toil`...