A. Domingues

Hi @jokergoo, I came across this issue while trying to create clusters of pathways from msigdb: When clustering gene sets there some clusters whose members very low correlation, include pairwise...

Hi, I am trying to install version v1.29.3 due to the ggplot2.3 breaking changes, using devtools and ran into a strange error: ```r devtools::install_github("tengfei/ggbio") Downloading GitHub repo tengfei/ggbio@master from URL...

Hi @Kumquatum, I trying the GWENA package which seems very intuitive and easy to use - thank you! My goal s detect gene models between two conditions, specially identify genes...

make contrasts file names consistent with those of the differentialabundance pipeline

1

### Description of feature **Motivation** Many projects will use a combination of `differentialabundance` and `rnasplice` analysis, using as input the processed data from `rnaseq`. Thus keeping the workflows as consistent...

IRS on non-normalized summed signal / noise data

2

Hi @pwilmart, This is not an issue but rather a question about normalization strategies. I am reading your IRS notebook (very thorough work and easy to read!), and noticed that:...