Shaun Adkins

I can also reproduce this issue, but the NotImplementedError changes depending on what line the error occurs on in the stacktrace. Also my error cites 'rpy2py' instead of 'py2rpy', which...

Hi @lgautier I'm not entirely sure if `projectR` is causing the issue, as if I got a similar error when calling `target_r_matrix = convert_r_df_to_r_matrix(target_r_df)` which has nothing to do with...

Hi @lgautier. I will try to get you a minimal example by the end of next week. I have some big deadlines early next week that depend on the current...

@lgautier I actually updated my R version in docker from 3.6.3 to 4.2.0 and this seems to have resolved my particular weird errors in rpy2 v3.5.2. In my non-Docker (M1...

@overg123 is it possible to install R by using brew and retry? I also have an M1 Macbook (Monterey 12.4), with both python and R installed from brew, and am...

@davidsebfischer, thank you for the response. From my testing and tinkering it seems the issue is using numpy's `unique` function in https://github.com/theislab/diffxpy/blob/b8c6ae0d7d957db72e41bc2e705c240348c66509/diffxpy/testing/utils.py#L114. The `numpy.unique` function sorts the unique values before...

> Thanks a lot for looking into this @adkinsrs! The issue with using pandas functions here is that the argument `grouping` of `split_x` does not necessarily receive `pandas.Series` in all...

I just ran into a dataset that had so many data samples that Scipy ran into a "maximum recursion depth exceeded" error when attempting to cluster the samples, so being...

I am also currently trying to figure out how to get around this. I am getting this error when calling `sc.pl.rank_genes_groups_violin` using a "gene_symbols" parameter (this function works when that...

> try passing to `gene_symbol` a _list_ object of the `var_names` you want to plot The "gene_symbols" param for `rank_gene_groups_violin()` takes a key from `adata.var` though. The "gene_names" field allows...