adf-ncgr

FWIW, this same thing happens when representing whole genome alignments (e.g. as produced by minimap2) in bam; if the query sequence is > 2^28 then the clipping operations that indicate...

Thanks for the quick reply and agreed (per #976) that the error handling has been much improved- I forgot that when I was really getting confused by the behavior I...

just a quick note from my side. we've done tours so far (including for GCV) using http://bootstraptour.com/ but it seems to be not actively developed for a couple of years;...

thanks @Midnighter - looks like @drpatelh is on top of it already (#100)! I haven't looked closely at that but I'll just add that I'd guess that simply swapping in...

splitting phenotype out makes good sense to me; I'm still not wild about the text/numeric/boolean quasi-"C union" approach to PhenotypeValue though. I vaguely recall our discussion, was there an argument...

One more for possible consideration is this: https://github.com/genometools/genometools/wiki/speck-User-manual it's different than the genometools gff3-validator @sierra-moxon has in the list above, and kind of interesting in that it allows extensibility via...