adec37

Subsetting a SQM Object by Sample Name

9

Hello! I am interested in subsetting my SQM Object by sample name. While I have found that some SQMTools functions such as plotFunctions() or plotTaxonomy() allows you to select the...

bracken-build "database library does not exist" for custom database

8

I used the GTDB database (https://gtdb.ecogenomic.org/) for kraken2 which consist of 'hash.k2d' 'opts.k2d' 'seqid2taxid.map' and 'taxo.k2d' files. I am now trying to run bracken-build as follows: `/users/a/d/adecola/anaconda3/envs/bracken/bracken-build -d /users/a/d/adecola/anaconda3/envs/kraken2/GTDB/ -k...