Adam Blanchard
Hi @iiSeymour, did you mean print output from? This is what I get: >>> import h5py >>> f = h5py.File('HQ_mapped.hdf5', 'r') >>> list(f.keys()) ['Batches', 'read_ids']
Yes it was, but I did the alignment step minimap2 rather than guppy_aligner. Would that cause this issue?
Based on the changeling in the directory v5.3.0?
> I'm also having this issue with v5.3.0 and have the same top level keys: `['Batches', 'read_ids']` Hopefully they are working on a solution.
Thanks @jackwadden for the heads up, that would be great work around short term.
Thats amazing thanks @jackwadden! I've made the edit on my end and set it to rerun. Fingers crossed.
Hi @jackwadden unfortunately no dice. Same error as before minus the last line > KeyError: "Unable to open object (object 'Reads' doesn't exist)" Is there a fix in the work...
Hi @jackwadden, yes same output from `list(f.keys())` will have a go with version 5.0.0 in the coming weeks. I have tried the end-to-end bonito model training but it didn't solve...