adamurminsky

Thank you Dan, I added the 0 to the mass offsets and I have intensity values. I deleted default glyco mass offsets and replaced them with my own from glycan...

Hi Fengchao, yes, I checked individual psm.tsv files and the peptides with glycans (composition) in "Observed modification" column have nonzero intensities. Also in the combined_modified_peptide.tsv there are nonzero intensities. There...

Hello Fengchao and Dan, I would like to ask one more thing. Is it possible to load **"glyco-N-Hybrid"** workflow in fragpipe and turn on the IonQuant? I have a combination...

Hello both, Dan, regarding your question - the first part: in psm.tsv of A4 file from 4500 glycopeptides around 50% have intensity values (I suppose it is approximately the same...

Regarding the MSFrager histogram I uploaded the combined_modified_peptide.tsv to R - I will explain only the histogram I uploaded but it is the same for all of the groups. Then...