Adam Talbot

See https://github.com/BioContainers/containers/pull/462

Yep, count me in. Lots of people are trying to solve this problem so might as well share it.

What sort of somatic mutations are you looking for?

Happy using the RTGeval engine. Use GIAB stratifications for easy or hard regions: https://github.com/genome-in-a-bottle/genome-stratifications

Definitely - run comparisons as part of CI/CD and you can track performance over time.

We wire in our full sized test to our release pipeline. So we hit the 'release' button, it runs the full sized test and only if it passes will it...

It's wired the other way. In our CI/CD platform there is the concept of CI/CD tests and a release pipeline. You hit the release button, it runs the minimal tests...

https://github.com/igvteam/igv-reports

Not familiar at all, it's the first I've heard of it!

I've hit this problem as well, is there a workaround?