Adam Talbot

https://gatk.broadinstitute.org/hc/en-us/articles/360037055772-CollectInsertSizeMetrics-Picard-

@vsmalladi I haven't had a chance to check this. I'm on leave next week but when I get a chance I will give it a go. If it has everything...

@vsmalladi I'm finding this raises an error with the autoscaling formula. Works fine if autoscalling is turned off. Have you found this? ``` Caused by: Status code 400, { "odata.metadata":"REDACTED/$metadata#Microsoft.Azure.Batch.Protocol.Entities.Container.errors/@Element","code":"AutoScalingFormulaEvaluationError","message":{...

Looks like plenty of nodes. If I turn off autoscaling it's fine. If I add a custom autoscaling formula to the pool it's fine: ``` pools { auto { vmType...

```bash nextflow -version N E X T F L O W version 22.04.5 build 5708 created 15-07-2022 16:09 UTC cite doi:10.1038/nbt.3820 http://nextflow.io ``` ```bash java -version openjdk version "17.0.4.1" 2022-08-12...

What would the benefit of having a Sarek specific Azure config be over updating the general Azure Batch config?

Given Azure VM sizes are region, account and time specific, it would make more sense to make it a parameter you can set. We don't have any E64s in our...

I have something that is already pretty close, if I open a PR could you give it some testing for me?

> @adamrtalbot yes I can do that. Are you thinking pipeline specific or generic to all pipelines? Take a look here: https://github.com/nf-core/configs/pull/406

Woops, I pushed to this repo instead of my fork. Didn't realise I had permission to do that. Hopefully that's OK.