Adam Labadorf

Here is a quick workaround you can put at the top of your notebook that will only show the exception and not the full stack: ```python from functools import partial...

The problem seems to be when using the default [prefiltering alignment mode](https://github.com/ratschlab/mmr/blob/master/OnlineData.cpp#L70) when there are orphaned mate pair reads. I couldn't figure out how to fix it, but I did...

@haibol2016 If your reads are paired-end, I suspect it is because 100bp reads are more likely to have orphaned ends. If you filter your BAM file so that the alignments...