achamess

Results 11 comments of achamess

Hey @renerocksai Any thoughts on what the error is? I know you're busy. This is just such a useful feature.

Thanks for trying! Sounds like it’s more trouble than it’s worth. From: Rene Schallner Reply-To: renerocksai/sublime_zk Date: Sunday, January 28, 2018 at 10:20 AM To: renerocksai/sublime_zk Cc: Alexander Chamessian ,...

Hey @renerocksai Thanks for the reply. Well the full-text search is regex right? Can I do complex boolean searches like "term 1" AND "term 2" AND NOT "term 3"? Also,...

Also, speaking of. My advanced tag search continues to not work, despite updating to the most recent version. Sorry for the trouble. ``` FuzzyFilePath cached 76 files in /Users/alex/Dropbox/Sublime_Zettel EVENT...

btw. the new download link for the singularity image doesn't output a .sif but rather the .vcf file.

Thanks! How can I produce that Elbow plot like you did in your paper using the outputs from souporcell? I'm just curious now. I know the ground truth for my...

That could be useful. Thanks for the explanation. Take a long time though, no? Thanks for making this software. I'm hopeful it can allow me to multiplex more human samples...

Hello. I am also using a Seurat object. In my pre-processing, I also use Harmony to correct for different batches, and then I use those Harmony embeddings for clustering. When...

I also had this problem. Recasting to dtype 'object' did not work. For me, I needed to recast to dtype 'str' and then it worked ``` adata.obs['L1_Round0'] = adata.obs['RNA_snn_res.2'] adata.obs['L1_Round0']...

Hi @hyunminkang. That sounds great. I hope to see it soon. Re @NicolasHipp 's question, is it advisable to use bulk RNA-seq to generate the VCF file with SNPs?