Abhishek Singh

Hi, Very nice tutorial, thanks a lot for making it available. I was just wondering at which step do you calculate the genomic location of restriction sites? For instance, I...

Creating loom files

1

Hi, My apologies in advance for a naive question. I am new to single cell RNA seq data analysis. I aim to create loom files for my scRNA data. I...

How to send query loom files through gene names and not through Gene ID

1

Hi, Presently, I can generate the loom files and can also upload them in SCOPE to visualise them I am generating the loom files as follows: ``` ```{r scRNALoomGeneration, echo=FALSE,...

Polyploidy Genomes

1

Hi, I was going through the tool and the article of mHiC and found that it could be the best suited tool for the polyploidy genomes with extensive repeats. Did...

s1_bwaAlignment.sh: line 30: [: GATC: integer expression expected

1

Hi, I put GATC as my cut site and when I run trhe program I get this message ``` bash s1_bwaAlignment.sh "$name" "$ref" "$bwaDir" "$samtoolsDir" "$fastqDir" "$resultsDir/s1" "$bin" "$nCores" "$resultsDir/mHiC.summary_w${resolution}_s1"...