Abdoallah Sharaf

icon indicating a website link https://abdosha.wixsite.com/asharaf icon indicating an email [email protected]

icon location SequAna - Sequencing Analysis Core Facility, University of Konstanz icon location Presently, I'm a senior bioinformatician at SequAna - Sequencing Analysis Core Facility, University of Konstanz

Results 3 issues of Abdoallah Sharaf

Issue with --download-library nt

9 comment

Hello, i tried several times to download nt library using: kraken2-build --threads 16 --download-taxonomy --db kraken_nt kraken2-build --threads 16 --download-library nt --db kraken_nt kraken2-build --build --threads 16 --db kraken_nt and...

using single ends reads

how i can use transfuse using single ends reads?

error with end-to-end

5 comment

Hello, i'm trying to run this command: genomad end-to-end MEGAHIT-group-Box_D1.contigs.fa ./ genomad_db --threads 50 --cleanup --min-score 0.7 --splits 1 with geNomad, version 1.7.1 and MMseqs2 Version: 14.7e284 but, got the...