Ángeles Arzalluz-Luque

NormalizeData() error: invalid class “Assay” object: 'meta.features' must have the same number of rows as 'data'

3

Hi, developers I encountered an issue when running NormalizeData() on a public dataset. I downloaded the SeuratObject [here](https://cellxgene.cziscience.com/collections/72d37bc9-76cc-442d-9131-da0e273862db) (_Mus musculus_ cerebellum dataset): ```r > seurat An object of class Seurat...

brie-event cannot read .gtf file

6

Hi, I am trying to use BRIE using a custom annotation file and the GENCODE M10 annotation file. In both cases, running `brie-event` as follows: `brie-event -a gencode.vM10.annotation.gtf` returns errors...

ERROR: dependency ‘howmany’ is not available for package ‘clusterExperiment’

1

Hi, I recently tried to install `clusterExperiment` via Bioconductor, and got the following error: ``` Warning: dependency ‘howmany’ is not available trying URL 'https://bioconductor.org/packages/3.18/bioc/src/contrib/clusterExperiment_2.22.0.tar.gz' (...) ERROR: dependency ‘howmany’ is not...

Hi, When trying to install `scrattch.hicat`, I run into the following error: ` ERROR: dependency ‘qlcMatrix’ is not available for package ‘scrattch.hicat’ ` It seems that `qlcMatrix` is no longer...

Removed the `exprs()` call that caused an error in `music2_prop_t_statistics()`. The bulk.case object was treated as an ESet object when it is already a matrix. This fix allows the function...