aamster

lineplot markers=True silently ignored

2

When `markers=True` is passed to `lineplot`, it is silently ignored. The documentation should be updated to explain that `markers=True` is only relevant when `style` is passed Ideally, `markers=True` would "just...

Remove to_json api

1

to_json API has been replaced by an external json creator, i.e `VBN2022InputJsonWriter` Remove all references to `to_json` in `DataObject` API

VBO documentation

2

An external user is having trouble accessing AllenSDK documentation for VBO linked to on the main VBO documentation page on read the docs. [Here](https://community.brain-map.org/t/is-there-a-public-facing-version-of-the-allensdk-methods-description-mentioned-on-the-read-the-docs-website/1610) is the issue. The linked documentation...

Use pickle file for session_type instead of mtrain

6

Currently, the BehaviorProjectLimsAPI uses [mtrain](https://github.com/AllenInstitute/AllenSDK/blob/351850c72fb7119b7e3de5f9fade93d58c7ec58a/allensdk/brain_observatory/behavior/behavior_project_cache/project_apis/data_io/behavior_project_lims_api.py#L265) to pull session type for behavior-only sessions. For behavior-ophys, it uses the value in the LIMS DB. Mtrain has incorrect values for several sessions. These...

Build a classifier to classify ROIs as cell for the SSF dataset

There is documentation lacking for much of the probes data. The following are the fields which need more documentation **Channel** - valid_data - local_index - probe_vertical_position - probe_horizontal_position - manual_structure_acronym...

Linting currently fails on master branch. Validation - [ ] Linting passes on master branch according to github actions

- Currently, populating the DB happens outside of running the segmentation modules. It should instead be moved to the modules themselves so that it doesn't have to be done after...

AllenSDK contains logic for SWDB from 2019: https://github.com/AllenInstitute/AllenSDK/tree/master/allensdk/brain_observatory/behavior/swdb This code is broken by #2109 . Consult with Marina as to whether SWDB 2019 logic can be removed from AllenSDK. If...

In working on #2112, an issue was encountered in which `EyeTrackingFile` and `RunningSpeed` seemed to return the same values even if the inputs changed. Because of this, caching was removed...