Alastair

Clarification of Hi-C Haplotypes

1

Hi, I just wanted to clarify my understanding of the haplotypes produced in Hi-C mode. Based on the paper and the docs, my interpretation of the hap1/hap2 output files when...

Error: Duplicate read ID - sga-bam2de.pl

2

Hi, I'm trying to build scaffolds from three matepair libraries with 3kb, 5kb and 8kb inserts (currently in BAM format). The person who generated these libraries has followed all steps...

ZeroDivisionError in assignLongReadToSNPs when samLines < 100

1

Hi, I've come across an edge case whilst messing around with the tool. When the number of reads in the long-read alignment file is less than 100, the following code...