Zjianglin

After converting `T` to `U`, it works.Thank you. By the way, do you have any suggestions for running `mxfold2` locally for short sequences (30~50bp) or longer sequences (5000 ~ 11000bp)?...

Thanks for your reply. Could you please point out that how long the sequences' secondary structure will be accurately predicted by `mxfold2`? And should I tune the `predict` parameters for...

Hi @iserf , do you solve this problem? I encountered similar problems. My installed `octopus` is: ```shell octopus version 0.7.4 Target: x86_64 Linux 5.11.0-1028-azure SIMD extension: AVX512 Compiler: GNU 10.3.0...

Hi， @jaswindersingh2 I have changed `path_blastn_database` as you suggestted, and the program now runs normally. However, It seems the original `nt` file from NCBI should be kept in the `path_blastn_database`...

Okay, got it. one more thing ,would you please tell me the best *RNA sequence length range* that `SPOT-RNA2` could accurately predict their secondary structures? I'm not familiar with `machine...