Ziyao Li
Ziyao Li
Dear users, We found that in a small amount of test cases (e. g. T1038 in CASP-14), using different GPUs may lead to different output results, sometimes with large variances...
:exclamation: Make to check out our [User Guide](https://github.com/soedinglab/hh-suite/wiki). ## Expected Behavior to successfully run hhsearch on [pdb70_from_mmcif_220313.tar.gz](https://wwwuser.gwdg.de/~compbiol/data/hhsuite/databases/hhsuite_dbs/pdb70_from_mmcif_220313.tar.gz) ## Current Behavior hhsearch errored out claiming "sequences in 6WOV_C do not all...
The colabfold.mmseqs.search.py generates a `qdb.lookup` to match queries and ids. This file is useful to map back the batched results. However, this file is removed by `mmseqs rmdb qdb`, which...
Get ready for lightning fast protein folding with Uni-Fold, now available on the [Bohrium Apps](https://app.bohrium.dp.tech/uni-fold/) platform. With just your target protein sequence and a quick registration, you can experience Uni-Fold's...
As a 3-order BSpline is used (most commonly), they can be well approximated by Gaussian RBF functions. LayerNorm is useful to avoid grid re-scaling. Two summing up to a much...
#141 proposes [FastKAN](https://github.com/ZiyaoLi/fast-kan) which uses 1D Gaussian RBF basis to replace the 3-order B-spline basis used in KAN. By doing so, KANs are in fact turned into an RBF network...