Zilong-Li

Hi, I don't think there is a good solution to copy text to clipboard with one click button for pure css, although I am not an expert on css. Alternatively,...

Hi @hlissner the new snippet works for me. Thanks.

For people who had a hard time working with the VCF on windows, I made a R package for rapid manipulation of the VCF (https://github.com/Zilong-Li/vcfppR/blob/main/tests/testthat/test-vcf-reader.R). Hope you find it helpful.

I tried to install `nano-modeline`. it didn't work. it's pity that have to abandon the `nano-modeline` in my configuration.

Hi, Thanks for trying out PCAone. May I ask what's your data format and what algorithm you want to have python bindings for. Although I don't have a plan for...

Hi, I think QUILT eats bam files and will take care of them. Normally you don't need to preprocess the bam files, especially no need for bam quality score control....

Hi, Regarding the parallelization I think QUILT and STITCH use basic _mclapply_ doing parallelization which would fork multiple processes with each core handling several samples. If the number of samples...

This was fixed in QUILT2 with dependency STITCH 1.7.1, see https://github.com/rwdavies/STITCH/releases/tag/1.7.1

@karstyl Hi, sorry, there is a bug in plotting this. But if you have truth data, you can specify the `--phasefile`, which should work. The bug will be fixed soon.

Hey Kiran, You can take a look at the `vcfcomp` function in https://github.com/Zilong-Li/vcfppR. You need to prepare 3 files, i.e imputed vcf, true vcf and a tsv file of allele...