ZheFrench

``` genes.enriched.Reactome

I'm trying to reproduce OE score you produce in this study, which by the way is impressive ! The idea behind the OE was also recently reused elsewhere https://rdcu.be/czHtb. I...

Highlight one specific flow. (2 flows leaving from one node)

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I have a node with two flows to two different next nodes. VEGFC -> NRP2 / VEGFC -> ITGB1 I want to color one flow only. ` scale_fill_manual(values = c('VEGFC'...

Lock error in 4.1.1 not in 4.03

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I removed the directory and reinstall biomartR several times. Didn't work. Any idea would be more than welcome. ``` Erreur dans lock(.sql_lock_path(dbfile)) : Cannot lock file: '/home/villemin/.cache/biomaRt/BiocFileCache.sqlite.LOCK': Aucun verrou disponible...

ARRIBA_VISUALISATION : Process exceeded running time limit (8h)

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### Description of the bug Process exceeded running time limit of (8h) for visualisation. That's weird it's taking so long. It was a recurrent one. I don't know if it's...

Retrieve ploidy fit value / - How to compute Chromosome Instability (CIN) Index - Fraction Genome Altered (FGA) ?

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Two questions : Is there a text file with the ploïdy written or the ploïdy fit only stands in the diagnostic plot ? I was wondering if it was possible...

Hi, Recently, I have been through the book and some tools of the field.( Seurat, STutility , STexampleData, ggspavis) I was wondering if I miss the part where you explain...

BulkSignalR

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Update the following URL to point to the GitHub repository of the package you wish to submit to _Bioconductor_ - Repository: https://github.com/ZheFrench/BulkSignalR Confirm the following by editing each check box...