ZhaoDanOnGitHub

Hi, When giving the tumor only data, we use the information entropy theory to perform microsatellite instability analysis. The details of this method are described in the paper we are...

You should use the deduplicated BAMs. In the end, you can get the correct results only by using the data that you think is the cleanest.

The difference in the depth of sequencing between tumor tissue and normal tissue will affect the judgment of whether the site is stable. Therefore, we normalize the read distribution so...

Hello, The function of drawing is for the sample group, not for a single sample. You can refer to the example in the test folder: msi_score_and_status_list and msi_score_only_list. Each line...