GraceX

About the '--masking 0' option

3

Hi, I'm curious about why, despite setting `--masking 0`, the sseq output still contains many results with 'XXXXXXXX'. like: `AERLDEVAAQRHCLTDRFHGGGQGGIGTGELLEREPXRLDHHVVQGGFETGRRFPCDVVDDLVEGVTDGQFGGDLGDRKAGRLGRQXXGTRHXRVHLDDDQPTVARVDRELDVAAAGVHTHLAQDRDAQVAHPLVFXVGQRHRXXXXXXXXXXHTHRVDVFDRAHHHHVVVAVAHQLEFEFLPAVNRFLDEHVGAGR-GRQPXXXXXXXXVGGVRYPRTQPAHGEARPXXXXXXXXXDRLTHFGXGETHSAPGGFATGLGXDVLEPLPVLAXLDGVXXXADEFHAVLFQHPALVQRDRGVQRGLPTQGRQQGVDLVAPLGLLGDNPLHERRGDGLYVGVVGELRVGHDGGRIRVHQADLQALGAQHPARLSPXVVELARLADDDRPGXXDQHVVXIGATGH ` Thank you!

Is there an option like blastp to set word size for short sequences?

1

Hi, I would like to know if the length of the amino acid sequence is only 40 to 50, how to set parameters such as word size like blastp for...