Zewei Song

Paired-end reads and --min-count

1

Hi, I'm not sure how megahit count kmers in the overlapped region of paired reads. Does megahit count these kmers as 1 or 2? I've noticed that if we just...

FileNotFoundError: [Errno 2] No such file or directory: 'test-predict_eccf5e84-d7e2-4805-bf8c-64f475650a4d/annotate/predict_results/Awesome_testicus.gff3'

15

**Are you using the latest release?** I'm using the latest version installed from conda **Describe the bug** I ran the command funannotate test -t predict and it stops with the...

Will circular DNA be reported?

3

Hi, we have found in our assembled results some contigs have identical first and last 141 bp, which is the longest kmer length we use. Can this kind of contigs...

Segmentation fault (core dumped)

5

Hi, Gabe I was trying to run NINJA-OPS on my Windows 10 BASH environment. I've got bowtie2 installed in the path and running ok. Here is the error message I...