Richard

question about my first galaxy tool

5

hi, I am a new one to galaxy. And I want to write a new tool. My scrip is here and it's for ledock. And when it runs, errors are...

`DRAM` running time

4

Hi, I am racently using DRAMv and follow this protocol `https://www.protocols.io/view/viral-sequence-identification-sop-with-virsorter2-btv8nn9w?step=1`. Could you tell how much time DRAMv will take ? How can I estimate the time?

ValueError: No template found for residue 165 (BNZ). The set of atoms is similar to HID, but it is missing 11 atoms.

6

Hi I try to reproduce the example you offered. the code is below. ``` from openforcefield.topology import Molecule molecule = Molecule.from_smiles('c1ccccc1') from openmmforcefields.generators import GAFFTemplateGenerator gaff = GAFFTemplateGenerator(molecules=molecule) from simtk.openmm.app...

How to count time ？

2

How to count time when I solve the large QUBO problem with qsolve on AWS？