Peter Hill

Variables in external projects are missing their prototypes if they are `type/class/procedure`, which means they are harder (impossible?) to look up. I don't think there's any way to recover this...

During `correlate`, if any names aren't resolved, we should print a warning

Similar to `extra_mods`, `extra_vartypes` could link to external documentation for that type.

Some projects specify markdown extensions with config, e.g. `markdown.extensions.toc(anchorlink=True)`. This currently doesn't work, I'm not sure when it stopped -- could be a `markdown` version thing. It should be pretty...

Fix SUNDIALS version guard and some deprecated function calls

5

Fixes an issue with one version guard (caught versions < x.2 instead of < 3.2) Also fixes some deprecated function calls. Turns out SUNDIALS v4 introduced a bunch of functions...

Fix various documentation issues

1

This is a bid to try and get the number of Sphinx warnings down, to ideally start using error on warnings. The major issue now is things like: ``` BOUT-dev/manual/sphinx/_breathe_autogen/file/pcr__thomas_8hxx.rst:4:...

Use `scikit-build-core` for Python API

2

https://scikit-build-core.readthedocs.io This runs CMake for us and integrates with pyproject.toml, so installing the Python API could just be `pip install .` which would run CMake for us.

Use `setuptools_scm` to set version

1

I'd really really like to completely remove all the hardcoded version numbers throughout the project. I discovered recently that you can run `setuptools_scm` from the command line, so we could...

> In this section it also states you can set ShiftAngle in the [mesh] section of the input file. This doesn't work for me -- is it still possible? I'm...