Zachary Stensland

Saving Misty model as .pkl

3

Hello, Not sure if this has been proposed yet but is there a way to save the model as a .pkl so that one could test data outside the training...

Spatially informed bivariate metrics in tensor cell2cell and MOFA

3

Hi all, I've been testing the use of cell2cell and MOFA within Liana and was wondering if there was a way to use the ligand-receptor information from the spatial bivariate...

Volcano plots for differentially expressed signaling pairs

2

I've been testing out this package and love it! I think a worthwhile investment would be more plotting functions for dendrograms and volcano plots to visualize the upregulated/downregulated signaling events...

Scaling before running linear model

2

Hello, I was reading through the methods for MISTy and wasn't sure if or how the factors in each view of the MISTy object are scaled before running the model....

glmmTMB variable lengths differ (found for 'offset(offset)')

2

Hello, I am using an r2py wrapper to use this program but seem to be running into a strange error where I am able to use sizeFactors just fine with...

Hello, We are attempting to use Tangram on a spatial dataset containing multiple tissue sections within a TMA. Because of this tissues from individual samples contain white space between them...

Hello, I've been using the tool and have had good success with resegmenting cells, getting polygon masks, and exporting to Xenium Explorer! I'm enjoying the tool but would like to...