ZabalaAitor

Cannot install: many warnings

14

Hi, I tried to install as recommended: ``` git clone --recursive `https://github.com/jts/nanopolish.git` cd nanopolish make ``` and I obtained many warnings. Example: ``` file_image.c:27:58: note: in expansion of macro ‘FAIL_PUTS_Endition))...

Guppy server initialization failed

2

Hi, I am really sorry because I have seen many issues about problems with initialization of the guppy server, but I am not able to solve it. As it is...

### Description of the bug I am running nf-core/rnaseq with the following command: ``` nextflow run nf-core/rnaseq -r 3.14.0 -profile docker --input /media/unidad/Expansion/Raw_Data/RNAseq_MS/samplesheet.csv --outdir /media/unidad/Expansion/analysis_MS_nfcore/results/rnaseq --fasta /media/unidad/Expansion/analysis_MS_nfcore/database/genomes/GRCh38/genome.fasta --gtf /media/unidad/Expansion/analysis_MS_nfcore/database/genomes/GRCh38/genes.gtf --transcript_fasta...

tombo preprocess error

7

Hi, I have followed the README and I obtained error after generating the .fastq file using guppy Basecall. This are the commands I used: ``` .../guppy_basecaller -i .../fast5_files/fast5_pass/barcode01/ -r -s...

Error executing process > 'NFCORE_CIRCDNA:CIRCDNA:CIRCLEMAP_REALIGN

2

### Description of the bug Hello, I'm reaching out regarding an intermittent error I've been encountering in my workflow. Specifically, I've observed that on occasion, a particular sample runs smoothly,...

ERROR ~ Invalid method invocation `call` with arguments using DCC

1

### Description of the bug Hello, I encountered this error using DCC. ### Command used and terminal output ```console nextflow pull nf-core/circrna nextflow run nf-core/circrna \ -r dev \ -profile...

GTF file not found with CIRIquant

4

### Description of the bug Hello, I recently encountered an error while running CIRIquant when providing a specific GTF file. Other tools, such as circRNA_finder, run without any issues and...