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                                            Mike

How to transform our HiC matrix data or processed reads to the training .bedpe file.

> Hi, the first 6 columns of the bedpe file are just interaction coordinates (https://bedtools.readthedocs.io/en/latest/content/general-usage.html#bedpe-format). The 7th column is optional and will not be used in the training. Let me...

How to transform our HiC matrix data or processed reads to the training .bedpe file.

> You only provide a positive set. any set of coordinates will be accepted, but ideally this should be from either an experiment different from the one you're training for...

How to transform our HiC matrix data or processed reads to the training .bedpe file.

> You only provide a positive set. any set of coordinates will be accepted, but ideally this should be from either an experiment different from the one you're training for...

How to transform our HiC matrix data or processed reads to the training .bedpe file.

> Positive set will reflect garbage-in-garbage-out philosophy. peakachu is intended to receive coordinates determined by another technology (chia pet, etc) in the same cell type. When we tried manually selecting...