Yuling

Why after imputation, a lot of variant sites have no variations. The AC of those sites are 0. What happened to those sites? Should I remove them for further analysis?

Generated the same results as Xenium did

3

Here's what I did ``` proseg --xenium "${INPUT_DIR}/transcripts.parquet" \ --output-expected-counts "expected-counts.csv.gz" \ --output-cell-metadata "cell-metadata.csv.gz" \ --output-cell-polygons "cell_polygons.geojson.gz" \ --output-transcript-metadata "transcripts_filtered.parquet" proseg-to-baysor \ transcripts_filtered.parquet \ cell_polygons.geojson.gz \ --output-transcript-metadata baysor-transcript-metadata.csv \ --output-cell-polygons...