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YuLab-SMU
:shower:A Tidy Tool for Phylogenetic Tree Data Manipulation
Hello. As described in previous issues #10 and #47 the problem remains: tens and tens of lines full of: ``` Found more than one class "phylo" in cache; using the...
Hi, sorry to disturb. Recently when I was using ggtreeExtra to plot tree, something went wrong. As you can see, > trda %>% unnest(RareAbundanceBySample) Error in UseMethod("unnest") : no applicable...
I have code for making a phylogenetic tree that relies on `ggtree`, `ggtreeExtra`, and `tidytree.` It was working perfectly for many months, up until several days ago, when `geom_hilight` and...
Works: ``` library(ape) data(woodmouse) d
Prior to delving into lineages at https://yulab-smu.top/treedata-book/chapter2.html#accesor-tidytree, it would be helpful to first simply explain how to do the basics, such as: * Get all tip labels (e.g., `tree$tip.label`). Must...
While https://yulab-smu.top/treedata-book/chapter2.html#accesor-tidytree is very helpful, one is still left wondering after reading this section: * How does one list all nodes labels/numbers or branch length? * Must one just resort...
Dear, I just tried to install other packages depending on tidytree and they failed. Installing tidytree itself also fails after looking for a missing class. I recently had other packages...
I am trying to colour branches on a tree based on their phylogenetic classification. I want to colour all branches from the same level, e.g. Class. I figured I should...
