Found more than one class "phylo" in cache

[INicolis]

Hello. As described in previous issues #10 and #47 the problem remains: tens and tens of lines full of:

Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
Also defined by 'tidytree'

It's impossible to ignore as the results are nested within these lines and turning message=FALSE is not a solution as it cuts all other messages as well.

Do you have a workaround?

Thanks!

[GuangchuangYu]

1. We need to register the phylo class via the setOldClass method.
2. The phylo class is also needed to be registered in other packages, e.g., phyloseq.
3. Then, this message started to appear.

We can do nothing about it as it is not an issue of a particular package.