ReactomePA

ReactomePA copied to clipboard

Hi, I want to run ReactomePA on my chick dataset but the organism (_Gallus gallus_) is not available. Would be available in the future or not? thanks Camilla

camilla0801

enrichPathway make readable does not work for yeast genome

7

Issue stems from enrichPathway looking for a column named SYMBOL which does not exist in the org.Sc.sgd.db object (see `columns(org.Sc.sgd.db)`). Instead for yeast this should use the "GENENAME" column. Alternately,...

snystrom

Hi, I'm running the enrichPathway function: x

ale07alvarez

Input structure of Gene Set Enrichment Analysis

6

I'm trying to write a shiny app using this package, however, I am unable to identify the input structure required to run GSEA. More specifically, I need to know what...

sajjad6al

Cannot extract results from enrichPathway

4

I have some code to analyze a dataset that I used in 2016 and that produced great results.. genes

ibichind

Cannot change cnetplot edge thickness and color

2

Dear Guangchuang, How to increase cnetplot edge thickness and change edge colour to black? I am using ReactomePA_1.24.0 on R version 3.5.1 (2018-07-02) Thanks Sincerely, Wasim ### Prerequisites + [...

wasimaftab

Hi Guangchuang Thank you very much for the package, and for your great support. I was using ReactomePA, and followed your instruction regarding genelist production and etc. Everything worked well,...

tiroshamit