MicrobiotaProcess

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Dear MicrobiotaProcess development Team, I am currently working with functional data generated from a FAPROTAX analysis and am seeking guidance on using the mp_diff_analysis function from your package for differential...

MizaR108

我应该如何通过示例数据中的这三个文件来构建一个mpse对象，  并且在mpse对象中包含taxatree和otutree？

zyc134

How to make MPSE object?

1

Hi, Would you mind to answer me the two questions from me? 1. After I follow your scripts: how to convert phyloseq object to mpse? #convert phyloseq object to mpse...

paiboon-aut

老师您好： 我在使用phyloseq导入的数据绘制稀疏曲线时发生错误，请问如何解决？ p_rare_nogroup % rowSums %>% var != 0 && !force) { : missing value where TRUE/FALSE needed

Elixir0822

Report: Large memory usage when run `mp_cal_abundance`

1

Before run `mp_cal_abundance`:  Then run `mp_cal_abundance`:  What I got: 

alienzj

Hi , I was interesented in calculating diff analysis. My dataset include 6 sample, 3 per group. So i was wondering is it possible to run diff analysis for less...

UpalabdhaD

Hello, I'm using the function ggrarecurve to plot rarefied data from a phyloseq object. Is there a way to add labels to the plotted data? this is the code: `rareres_pico

soluna1

Hi, I was hoping to get a bit more understand of the diff_analysis, if possible. I am struggling to understand why I get different taxa as significant from the diff_analysis...

dalferes

Hi, I was wondering if its possible to do diff analysis without rarefying? I ran this script ``` mpse %% mp_diff_analysis(.abundance = RelAbundanceBySample, .group = cagA, first.test.alpha = .05, strict...

cmetadea

How to convert phloseq object to MPSE object properly with funtion as.MPSE

7

Hi dear developer, I read your "ggtreeExtra的开发及其在宏基因组上的应用" from YuLabSMU wechat channel. It is a very nice and helpful tutorial. But I am confused about the MPSE object which you use...

taekwonleo-yuhao