Yasin El Abiead

just wondering if there is a fix by now?

Hello SIRIUS scientists :) in SIRIUS 6.0.0 under Windows 11 I am still running into the same problem (see below). Also I think the documentation should be updated regarding arguments...

Hey, yes seems like there is no charge reported. Unfortunately, that's common in public metabolomics data. Are you using the charge information in some way or you using this basically...

Hey, thank you for working on this! I tried out the branch where you implemented it and it seems to work now. However, it appears you won't allow clusters to...

Thanks! Interesting that the charge state splitting was the main reason for falcons better performance. Did not completely grasp that from the MS-RT manuscript. If charge states are that essential...

Interesting. Typically like in the files I shared in the beginning of the issue and also files such as [this](https://dashboard.gnps2.org//?xic_mz=1078.8213&xic_formula=&xic_peptide=&xic_tolerance=0.5&xic_ppm_tolerance=10&xic_tolerance_unit=Da&xic_rt_window=8.751666666666667&xic_norm=False&xic_file_grouping=MZ&xic_integration_type=AUC&show_ms2_markers=True&ms2marker_color=blue&ms2marker_size=5&ms2_identifier=MS2%3A3741&show_lcms_2nd_map=False&map_plot_zoom=%7B%7D&polarity_filtering=None&polarity_filtering2=None&tic_option=TIC&overlay_usi=None&overlay_mz=None&overlay_rt=None&overlay_color=&overlay_size=&overlay_hover=&overlay_filter_column=&overlay_filter_value=&feature_finding_type=Off&feature_finding_ppm=10&feature_finding_noise=10000&feature_finding_min_peak_rt=0.05&feature_finding_max_peak_rt=1.5&feature_finding_rt_tolerance=0.3&massql_statement=QUERY+scaninfo%28MS2DATA%29&sychronization_session_id=f2478d97ad3b4133a6e6c5ea16219dd7&chromatogram_options=%5B%5D&comment=&map_plot_color_scale=Hot_r&map_plot_quantization_level=Medium&plot_theme=plotly_white#%7B%22usi%22%3A%20%22mzspec%3AMSV000081582%3Accms_peak/Skin%20samples/10A12_RA12_01_14463.mzML%22%2C%20%22usi_select%22%3A%20%22mzspec%3AMSV000081582%3Accms_peak/Skin%20samples/10A12_RA12_01_14463.mzML%22%2C%20%22usi2%22%3A%20%22%22%7D) do not appear to charge information for any of the...

I run into the issue because I like clustering spectra of files from different studies because I can align things despite different retention times (with admittedly high tolerances when clustering...

Ah, that would be a good intermediate solution. Unfortunately, `precursorRefine ` only works for Orbitrap/FT data though.

Oh, it seems I have an outdated version. Thanks!