Yanst86

Problem at Zellkonverter finding conda environment

2

Hello, I am trying to convert SingleCellExperiment object to Anndata/h5ad using writeH5AD, however I get this error: > library(zellkonverter) > Registered S3 method overwritten by 'zellkonverter': > method from >...

Slingshot followed by CellRank

1

Hi, I performed a Slingshot analysis on my Seurat data in R, and would like to import the output to CellRank in Python for a follow up analysis. However, I...

Pulling and plotting Differential pseudotime data across different conditions/metadata slots

1

Hi Kelly, First of all, thank you for producing and maintaining this package, it is great and gave me very interesting insights about my data. I recently came across [this...

Definition of 'Specific Pathways' and minimizing pathways/cell-cell interacting molecules in a plot

3

Hi,, First of all, thanks for the great package, it provides very interesting biological insights about my data! I have two technical questions about plots that compare two datasets: 1....